Will I get the raw sequencing data (base call files) upon delivery?

By default, we do not transfer the base call files. However, you can ask for it and we will transfer the raw data along with the analysis data. It is useful to have them in case you want to re-run the whole CellRanger pipeline by your own.

Can I sort in a 96 well plate for Smart-seq2?

It has been decided to only run Smart-seq2 on 384-well plates. Thus, 96-well plates is not an option.